Microtubules interacting with a boundary: mean length and mean first-passage times.
نویسنده
چکیده
I formulate a dynamical model for microtubules interacting with a catastrophe-inducing boundary. In this model microtubules are either waiting to be nucleated, actively growing or shrinking, or stalled at the boundary. I first determine the steady-state occupation of these various states and the resultant length distribution. Next, I formulate the problem of the mean first-passage time to reach the boundary in terms of an appropriate set of splitting probabilities and conditional mean first-passage times and solve explicitly for these quantities using a differential equation approach. As an application, I revisit a recently proposed search-and-capture model for the interaction between microtubules and target chromosomes [M. Gopalakrishnan and B. S. Govindan, Bull. Math. Biol. 73, 2483 (2011)]. I show how my approach leads to a direct and compact solution of this problem.
منابع مشابه
Mean first passage times across a potential barrier in the lumped state approximation
The lumped state approximation ~LSA! is a method for handling boundary conditions for diffusion on an interval which simplifies the description of transitions into and out of the interval. It was originally motivated by the problem of proton conduction through the ion channel gramicidin. This paper discusses the mean first passage time of a diffuser crossing a potential barrier in the lumped st...
متن کاملDwell time of a Brownian interacting molecule in a cellular microdomain
The time spent by an interacting Brownian molecule inside a bounded microdomain has many applications in cellular biology, because the number of bounds is a quantitative signal, which can initiate a cascade of chemical reactions and thus has physiological consequences. In the present article, we propose to estimate the mean time spent by a Brownian molecule inside a microdomain Ω which contains...
متن کاملFirst-passage properties of molecular spiders.
Molecular spiders are synthetic catalytic DNA-based nanoscale walkers. We study the mean first-passage time for abstract models of spiders moving on a finite two-dimensional lattice with various boundary conditions and compare it with the mean first-passage time of spiders moving on a one-dimensional track. We evaluate by how much the slowdown on newly visited sites, owing to catalysis, can imp...
متن کاملFirst passage times and asymmetry of DNA translocation.
Motivated by experiments in which single-stranded DNA with a short hairpin loop at one end undergoes unforced diffusion through a narrow pore, we study the first passage times for a particle, executing one-dimensional Brownian motion in an asymmetric sawtooth potential, to exit one of the boundaries. We consider the first passage times for the case of classical diffusion, characterized by a mea...
متن کاملتأثیر ماساژ بازتابی پا بر دفع مکونیم در نوزادان سالم
Introduction: In the infants, meconium passage is an important phenomenon in the first days of life and acceleration its excretion can prevent complications. Foot reflexology is one of complementary therapies that can help to improve health status. The purpose of this study was to determine effect of foot reflexology on meconium passage in healthy infants. Methods: In this controlled clinica...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید
ثبت ناماگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید
ورودعنوان ژورنال:
- Physical review. E, Statistical, nonlinear, and soft matter physics
دوره 86 1 Pt 1 شماره
صفحات -
تاریخ انتشار 2012